Date of Award
Master of Science (MS)
Dr. Alex Zelikovsky
Next Generation Sequencing (NGS) is a powerful technology that has enabled sequencing of thousands to millions of DNA molecules simultaneously. NGS can be applied to any species and source of DNA including viral genomes. CliqueSNV is a novel reference-based tool for reconstruction of viral variants from NGS data. In this thesis, we present a graphical user interface for CliqueSNV installed on Galaxy and as a standalone application such that microbiologists can use the tool without having to type any command line instructions and can also run multiple experiments and include it into pipelines.
Channadi, Sakshitha, "CliqueSNV: GUI and Deployment on Galaxy." Thesis, Georgia State University, 2020.
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