Date of Award
5-8-2020
Degree Type
Thesis
Degree Name
Master of Science (MS)
Department
Computer Science
First Advisor
Dr. Alex Zelikovsky
Second Advisor
Sergey Knyazev
Abstract
Next Generation Sequencing (NGS) is a powerful technology that has enabled sequencing of thousands to millions of DNA molecules simultaneously. NGS can be applied to any species and source of DNA including viral genomes. CliqueSNV is a novel reference-based tool for reconstruction of viral variants from NGS data. In this thesis, we present a graphical user interface for CliqueSNV installed on Galaxy and as a standalone application such that microbiologists can use the tool without having to type any command line instructions and can also run multiple experiments and include it into pipelines.
DOI
https://doi.org/10.57709/17544286
Recommended Citation
Channadi, Sakshitha, "CliqueSNV: GUI and Deployment on Galaxy." Thesis, Georgia State University, 2020.
doi: https://doi.org/10.57709/17544286
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