Title

TRIP: A method for novel transcript reconstruction from paired-end RNA-seq reads

Authors

Serghei MangulFollow
Adrian CaciulaFollow
Dumitru BrinzaFollow
Ion I. Măndoiu
Alexander Zelikovskiy, Georgia State UniversityFollow

Document Type

Article

Publication Date

2012

Abstract

Preliminary experimental results on synthetic datasets generated with various sequencing parameters and distribution assumptions show that TRIP has increased transcriptome reconstruction accuracy compared to previous methods that ignore fragment length distribution information.

Comments

This article was originally published in BMC Bioinformatics.

© 2012 Mangul et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Recommended Citation

Mangul et al.: TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads. BMC Bioinformatics 2012 13(Suppl 18):A11. doi: 10.1186/1471-2105-13-S18-A11

Creative Commons License

This work is licensed under a Creative Commons Attribution 3.0 License.